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Identification of Drought-Related Regulatory Elements in Tomato: A Bioinformatics Approach

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Identification of Drought-Related Regulatory Elements in Tomato: A Bioinformatics Approach

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Title	Identification of Drought-Related Regulatory Elements in Tomato: A Bioinformatics Approach
Author(s)	Carlisle, Gabriel
Co-author(s)	Matzner, Steven L.; Vitiello, Seasson P.
Abstract	With the threat of climate change and increasing demands for water resources, agricultural produc6on may be more susceptible to drought-related crop losses. Understanding the mechanisms by which plants respond to drought stress is essential. A recent DNA microarray study (Gong et al 2010) identified over 600 differentially expressed genes in tomatoes. A bioinformatics approach for gene analysis was designed with the goal of identifying regulatory elements associated with these differentially expressed genes. In addition, we hope to determine whether these elements work as enhancers or silencers of expression and whether combinatorial gene regulation is occurring within this system. Identification of potential transcription factor binding motifs may provide a clearer understanding of the mechanisms regulating these systems in the differential expression of genes in response to drought.
Subject (LC)	Tomatoes--Genetics Plants--Drought tolerance
Subject (FAST)	Tomatoes--Genetics Plants--Drought tolerance
Research affiliation	National Science Foundation
Collection	Augustana Student Research
Date	2015
Rights	This image may not be reproduced without the express written consent of Augustana University, Sioux Falls, South Dakota, USA.
Type	Poster
Medium	Image
Format - Digital	pdf